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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
46
total RNA-seq
18
small RNA-seq
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
74
DNA binding
67
Transcription
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
32
control
30
histone
30
histone modification
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
709
February, 2021
398
May, 2021
355
August, 2017
341
May, 2020
336
November, 2017
319
August, 2021
305
October, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
94
December, 2017
81
July, 2019
80
April, 2019
76
October, 2018
73
September, 2018
72
November, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
149
bam
124
bigWig
67
tsv
60
fastq
52
bed narrowPeak
47
bigBed narrowPeak
4
bed bed3+
4
hdf5
Organism
157
Homo sapiens
Biosample type
133
tissue
24
primary cell
Organ
57
pancreas
40
connective tissue
35
adipose tissue
16
brain
15
heart
9
blood vessel
9
epithelium
9
vasculature
8
liver
8
musculature of body
7
kidney
4
limb
3
artery
1
pericardium
Project
157
AMP
Genome assembly (visualization)
123
hg19
118
GRCh38
Lab
157
AMP-T2D consortium
Audit category:
1
inconsistent control read length
files.file_type!
bed broadPeak
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
157 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
body of pancreas
33
2
2
subcutaneous adipose tissue
12
4
1
endocrine pancreas
16
omental fat pad
11
4
1
gastrocnemius medialis
4
+ See 20 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
pancreatic acinar cell
2
skeletal muscle satellite cell
1
1
Purkinje cell
1
+ See 15 more…
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