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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
529
ATAC-seq
84
snATAC-seq
75
WGBS
21
RRBS
6
DNase-seq
5
FAIRE-seq
1
DNAme array
Assay category
1918
Transcription
1757
DNA binding
624
DNA accessibility
97
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
140
May, 2022
105
February, 2023
100
May, 2020
82
August, 2021
55
February, 2021
35
July, 2019
35
May, 2021
26
November, 2019
26
October, 2019
24
August, 2017
16
January, 2021
14
September, 2018
11
May, 2023
10
April, 2020
8
November, 2018
7
August, 2020
7
October, 2017
5
September, 2017
4
March, 2020
3
January, 2018
3
March, 2019
3
September, 2020
1
August, 2022
1
November, 2020
Available data
492
bed narrowPeak
407
bam
367
bigWig
241
bigBed narrowPeak
209
bed bed3+
bed broadPeak
206
bigBed broadPeak
123
fastq
101
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
720
Homo sapiens
Biosample type
330
tissue
318
primary cell
42
in vitro differentiated cells
31
cell line
Organ
217
pancreas
160
epithelium
89
kidney
57
heart
50
vasculature
49
blood vessel
45
artery
32
connective tissue
31
liver
29
eye
12
adipose tissue
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
9
limb
8
musculature of body
7
brain
3
spleen
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
vein
Project
538
AMP
144
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
288
hg19
252
GRCh38
Lab
406
AMP-T2D consortium
144
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
44
inconsistent ontology term
29
audit script error
1
inconsistent replicate
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
721 results
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Clear Filters
ATAC-seq
snATAC-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
DNAme array
tissue
kidney
75
6
1
1
islet of Langerhans
66
7
1
1
1
coronary artery
36
liver
20
3
1
retina
15
+ See 39 more…
primary cell
pancreatic alpha cell
35
31
Langerhans cell
48
pancreatic beta cell
23
16
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 49 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
HepG2
1
1
GM12878
1
glomerular visceral epithelial cell
1
See all biosamples
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