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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1757
ChIP-seq
1533
total RNA-seq
529
ATAC-seq
363
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
6
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1
Transcription
Date released
4
August, 2021
1
March, 2023
Available data
2
bed bed3+
Organism
4
Homo sapiens
Biosample type
3
cell line
2
in vitro differentiated cells
Organ
2
connective tissue
2
epithelium
2
pancreas
Project
4
AMP
1
community
Genome assembly (visualization)
2
hg19
Lab
2
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
1
Anna Gloyn, Oxford
Audit category:
2
inconsistent ontology term
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
5 results
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Capture-C
siRNA RNA-seq
cell line
EndoC_BH1
2
EndoC-BH1
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
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