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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
152
ChIP-seq
25
ATAC-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
0
HiChIP
Assay category
152
DNA binding
Target of assay
77
histone
77
histone modification
44
broad histone mark
40
transcription factor
35
control
32
narrow histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
116
August, 2017
23
October, 2018
12
June, 2019
1
October, 2019
Available data
102
bam
90
fastq
75
bigWig
58
bed narrowPeak
22
tagAlign
15
bigBed narrowPeak
11
bed bed3+
bed broadPeak
Organism
152
Homo sapiens
Biosample type
73
tissue
67
in vitro differentiated cells
12
primary cell
Organ
494
liver
206
pancreas
203
brain
152
connective tissue
134
heart
123
epithelium
96
vasculature
95
blood vessel
72
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
35
nerve
34
artery
26
musculature of body
22
embryo
20
spleen
15
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
152
AMP
Genome assembly (visualization)
75
GRCh38
75
hg19
Lab
152
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
152 results
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Clear Filters
ChIP-seq
tissue
subcutaneous abdominal adipose tissue
35
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
adipose tissue
2
+ See 1 more…
in vitro differentiated cells
adipocyte
67
primary cell
mesenchymal stem cell
7
cardiac fibroblast
5
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