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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
203
DNA binding
Target of assay
175
histone
175
histone modification
109
narrow histone mark
66
broad histone mark
28
control
Date released
84
October, 2019
79
November, 2017
28
May, 2019
12
October, 2017
Available data
196
bam
172
bigWig
170
bed narrowPeak
118
tagAlign
94
bigBed narrowPeak
18
fastq
bed broadPeak
6
bigBed broadPeak
1
tagAlign bed3+
Organism
203
Homo sapiens
Biosample type
200
tissue
3
primary cell
Organ
472
liver
206
pancreas
203
brain
152
connective tissue
134
heart
119
epithelium
96
vasculature
95
blood vessel
72
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
35
nerve
34
artery
26
musculature of body
22
embryo
20
spleen
15
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
203
AMP
Genome assembly (visualization)
157
GRCh38
108
hg19
Lab
203
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
2
missing controlled_by
files.file_type!
bed broadPeak
month_released!
August, 2021
BIOSAMPLE
ASSAY
203 results
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ChIP-seq
tissue
layer of hippocampus
23
brain
17
angular gyrus
15
substantia nigra
15
temporal lobe
15
+ See 63 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
See all biosamples
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