Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
123
ChIP-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
8
Hi-C
6
MeRIP-seq
6
RRBS
3
DNase-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
123
DNA binding
Target of assay
89
histone
89
histone modification
47
narrow histone mark
42
broad histone mark
27
control
7
transcription factor
6
RNA binding protein
1
chromatin remodeller
Date released
26
August, 2017
22
October, 2019
21
September, 2018
19
December, 2017
13
November, 2019
6
June, 2019
5
May, 2019
4
August, 2021
4
May, 2021
2
November, 2017
1
March, 2020
Available data
129
bam
101
bigWig
97
bed narrowPeak
72
fastq
36
bigBed narrowPeak
7
tagAlign
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
Organism
123
Homo sapiens
Biosample type
86
primary cell
22
in vitro differentiated cells
15
cell line
Organ
494
liver
206
pancreas
203
brain
152
connective tissue
134
heart
123
epithelium
96
vasculature
95
blood vessel
72
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
35
nerve
34
artery
26
musculature of body
22
embryo
20
spleen
15
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
121
AMP
2
T1D
Genome assembly (visualization)
95
hg19
93
GRCh38
Lab
123
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
123 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
primary cell
endothelial cell of umbilical vein
15
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
epithelial cell of proximal tubule
10
+ See 6 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
cell line
EndoC_BH1
15
See all biosamples
Download