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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
494
ChIP-seq
189
total RNA-seq
23
ATAC-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
494
DNA binding
Target of assay
294
transcription factor
108
control
89
histone modification
88
histone
82
recombinant protein
54
RNA binding protein
54
narrow histone mark
34
broad histone mark
19
chromatin remodeller
1
other context
1
other post-translational modification
Date released
257
November, 2017
63
December, 2017
50
May, 2020
49
November, 2018
48
August, 2017
22
August, 2021
5
October, 2019
Available data
510
bam
452
fastq
432
bigWig
413
bed narrowPeak
352
bigBed narrowPeak
86
tagAlign
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
494
Homo sapiens
Biosample type
320
cell line
155
tissue
15
in vitro differentiated cells
4
primary cell
Organ
494
liver
206
pancreas
203
brain
152
connective tissue
123
epithelium
96
vasculature
95
blood vessel
94
heart
72
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
35
nerve
34
artery
26
musculature of body
22
embryo
20
spleen
15
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
494
AMP
Genome assembly (visualization)
371
hg19
316
GRCh38
Lab
476
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
494 results
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Clear Filters
ChIP-seq
cell line
HepG2
320
tissue
liver
145
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
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