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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
459
total RNA-seq
168
ChIP-seq
52
ATAC-seq
8
WGBS
6
single cell RNA-seq
5
Hi-C
3
pCHi-C
3
small RNA-seq
1
FAIRE-seq
1
RNA microarray
1
RRBS
Assay category
168
DNA binding
Target of assay
98
histone
98
histone modification
63
broad histone mark
46
control
35
narrow histone mark
24
transcription factor
8
RNA binding protein
Date released
50
May, 2019
49
August, 2017
38
October, 2019
23
October, 2018
6
February, 2021
2
November, 2017
Available data
139
bam
98
bigWig
82
bed narrowPeak
77
bigBed narrowPeak
43
fastq
14
tagAlign
bed broadPeak
6
bigBed broadPeak
4
bed bed3+
Organism
168
Homo sapiens
Biosample type
145
tissue
17
primary cell
6
cell line
Organ
494
liver
206
pancreas
203
brain
152
connective tissue
134
heart
123
epithelium
96
vasculature
95
blood vessel
72
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
35
nerve
34
artery
26
musculature of body
22
embryo
20
spleen
15
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
168
AMP
Genome assembly (visualization)
91
hg19
89
GRCh38
Lab
168
AMP-T2D consortium
Audit category:
12
missing controlled_by
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
168 results
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Clear Filters
ChIP-seq
tissue
subcutaneous abdominal adipose tissue
35
tibial artery
23
ascending aorta
16
thoracic aorta
16
aorta
13
+ See 5 more…
primary cell
endothelial cell of umbilical vein
15
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
cell line
smooth muscle cell of the coronary artery
6
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