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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
34
ChIP-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
3
DNase-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
34
DNA binding
Target of assay
89
histone
histone modification
47
narrow histone mark
42
broad histone mark
27
control
7
transcription factor
6
RNA binding protein
1
chromatin remodeller
Date released
12
August, 2017
5
December, 2017
4
June, 2019
3
November, 2019
3
October, 2019
2
May, 2019
2
May, 2021
2
November, 2017
1
August, 2021
Available data
36
bam
21
fastq
11
bigWig
9
bed narrowPeak
7
bigBed narrowPeak
3
tagAlign
bed broadPeak
2
bigBed broadPeak
Organism
34
Homo sapiens
Biosample type
24
primary cell
7
in vitro differentiated cells
3
cell line
Organ
405
liver
75
connective tissue
67
pancreas
59
blood
59
bodily fluid
41
adipose tissue
37
heart
34
epithelium
29
vasculature
28
blood vessel
28
brain
22
kidney
17
limb
14
artery
14
spleen
11
nerve
10
embryo
6
musculature of body
2
eye
2
vein
Project
34
AMP
Genome assembly (visualization)
9
hg19
7
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
files.file_type!
bed broadPeak
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
epithelial cell of proximal tubule
3
endothelial cell of umbilical vein
2
kidney epithelial cell
2
+ See 4 more…
in vitro differentiated cells
hepatocyte
3
Hepatic endoderm
2
pancreatic PP cell
2
cell line
EndoC_BH1
3
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