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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1717
ChIP-seq
1533
total RNA-seq
529
ATAC-seq
363
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
6
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
11
DNA accessibility
Date released
4
August, 2017
4
October, 2019
2
July, 2019
1
November, 2018
Available data
214
bam
214
bed narrowPeak
214
bigBed narrowPeak
214
bigWig
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
14
fastq
1
tar
Organism
11
Homo sapiens
Biosample type
6
tissue
4
primary cell
1
cell line
Organ
4
epithelium
4
kidney
3
pancreas
1
blood vessel
1
brain
1
liver
1
vasculature
1
vein
Project
11
AMP
Genome assembly (visualization)
8
hg19
2
GRCh38
Lab
11
AMP-T2D consortium
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
11 results
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DNase-seq
FAIRE-seq
tissue
islet of Langerhans
1
1
frontal cortex
1
kidney
1
pancreas
1
right lobe of liver
1
primary cell
endothelial cell of umbilical vein
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
skeletal muscle myoblast
1
cell line
glomerular visceral epithelial cell
1
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