Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
233
total RNA-seq
212
ChIP-seq
152
single cell RNA-seq
137
ATAC-seq
82
snATAC-seq
17
pCHi-C
5
Hi-C
5
STARR-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
233
Transcription
Date released
59
August, 2021
59
May, 2021
45
May, 2020
44
February, 2023
26
May, 2022
Available data
106
tsv
102
bam
98
bigWig
55
txt
45
fastq
2
bed bed3+
Organism
233
Homo sapiens
Biosample type
137
primary cell
82
tissue
9
cell line
5
in vitro differentiated cells
Organ
66
pancreas
epithelium
49
kidney
29
liver
Project
101
T1D
93
AMP
39
HPAP
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
115
Kyle Gaulton, UCSD
49
Katalin Susztak, Upenn
39
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
files.file_type!
bed broadPeak
organ_slims!
epithelium
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
233 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
primary cell
monocyte
53
exocrine cell
39
CD8-positive, alpha-beta T cell
4
B cell
2
T follicular helper cell
2
+ See 21 more…
tissue
kidney
49
liver
20
islet of Langerhans
12
pancreas
1
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
See all biosamples
Download