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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ChIP-seq
Assay category
96
DNA binding
Target of assay
884
histone modification
883
histone
451
narrow histone mark
446
transcription factor
431
broad histone mark
328
control
96
RNA binding protein
82
recombinant protein
31
chromatin remodeller
4
other context
4
other post-translational modification
2
nucleotide modification
Date released
30
November, 2017
21
November, 2018
11
October, 2018
6
August, 2017
6
January, 2019
5
May, 2021
4
April, 2019
4
December, 2017
4
May, 2019
2
December, 2018
2
June, 2019
1
August, 2021
Available data
99
bam
97
bigWig
96
bed narrowPeak
90
bigBed narrowPeak
89
fastq
bed broadPeak
9
bigBed broadPeak
2
bed bed3+
1
tar
Organism
96
Homo sapiens
Biosample type
60
cell line
23
tissue
11
in vitro differentiated cells
2
primary cell
Organ
54
liver
10
blood
10
bodily fluid
9
connective tissue
8
pancreas
5
adipose tissue
5
heart
3
blood vessel
3
epithelium
3
vasculature
1
artery
1
eye
1
kidney
Project
96
AMP
Genome assembly (visualization)
87
hg19
84
GRCh38
Lab
90
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
4
inconsistent control read length
3
inconsistent control run_type
files.file_type!
bed broadPeak
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
96 results
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Clear Filters
ChIP-seq
cell line
HepG2
50
GM12878
10
tissue
body of pancreas
5
heart left ventricle
3
omental fat pad
3
islet of Langerhans
2
subcutaneous adipose tissue
2
+ See 8 more…
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
primary cell
cardiac muscle cell
1
retinal pigment epithelial cell
1
See all biosamples
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