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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
Assay category
35
DNA binding
Target of assay
19
histone
19
histone modification
16
transcription factor
10
narrow histone mark
9
broad histone mark
5
chromatin remodeller
1
RNA binding protein
1
recombinant protein
Date released
15
August, 2017
11
December, 2017
5
November, 2017
2
February, 2018
1
November, 2018
1
October, 2018
Available data
48
bam
48
bigWig
48
fastq
46
bed narrowPeak
23
bigBed narrowPeak
bed broadPeak
13
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
35
Homo sapiens
Biosample type
17
in vitro differentiated cells
6
cell line
6
tissue
4
primary cell
2
stem cell
Organ
9
pancreas
7
liver
6
connective tissue
5
epithelium
3
embryo
Project
35
AMP
Genome assembly (visualization)
35
hg19
34
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
43
inconsistent control read length
inconsistent control run_type
2
inconsistent assembly
files.file_type!
bed broadPeak
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
cell line
HepG2
6
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
stem cell
hESC
2
See all biosamples
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