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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1669
ChIP-seq
1428
total RNA-seq
518
ATAC-seq
363
single cell RNA-seq
87
RNA microarray
75
WGBS
66
snATAC-seq
40
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
6
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
66
DNA accessibility
18
Transcription
Date released
27
February, 2021
22
May, 2022
18
July, 2019
10
April, 2020
6
August, 2021
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
18
bam
18
bigWig
18
tsv
1
bed bed3+
1
txt
Organism
83
Homo sapiens
Biosample type
50
primary cell
34
tissue
Organ
10
lung
7
kidney
4
brain
3
adipose tissue
3
connective tissue
3
liver
3
musculature of body
3
pancreas
1
heart
Project
48
HPAP
26
AMP
T1D
10
LungMap
Genome assembly (visualization)
19
hg19
18
GRCh38
Lab
48
Klaus Kaestner, Upenn
20
AMP-T2D consortium
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
files.file_type!
bed broadPeak
award.project!
T1D
BIOSAMPLE
ASSAY
84 results
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snATAC-seq
small RNA-seq
primary cell
Langerhans cell
48
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
tissue
lung
10
kidney
6
body of pancreas
2
right lobe of liver
2
skeletal muscle tissue
1
1
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