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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1459
ChIP-seq
1286
total RNA-seq
329
ATAC-seq
176
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
WGBS
28
snATAC-seq
24
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
3
DNA accessibility
Date released
2
August, 2017
1
October, 2019
Available data
180
bam
180
bed narrowPeak
180
bigBed narrowPeak
180
bigWig
bed broadPeak
178
bigBed broadPeak
177
bed bed3+
11
fastq
Organism
3
Homo sapiens
Biosample type
primary cell
2
tissue
1
cell line
Organ
1
epithelium
1
kidney
1
liver
1
pancreas
Project
3
AMP
Genome assembly (visualization)
2
GRCh38
2
hg19
Lab
3
AMP-T2D consortium
files.file_type!
bed broadPeak
biosample_type!
primary cell
BIOSAMPLE
ASSAY
3 results
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DNase-seq
tissue
islet of Langerhans
1
right lobe of liver
1
cell line
glomerular visceral epithelial cell
1
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