Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
316
total RNA-seq
85
ChIP-seq
79
ATAC-seq
11
snATAC-seq
10
MeRIP-seq
6
Hi-C
6
single cell RNA-seq
4
WGBS
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
pCHi-C
Assay category
324
Transcription
93
DNA accessibility
85
DNA binding
6
3D chromatin structure
6
DNA methylation
Target of assay
51
histone
51
histone modification
30
control
27
narrow histone mark
24
broad histone mark
9
transcription factor
5
nucleotide modification
3
RNA binding protein
Date released
135
August, 2017
120
July, 2018
61
May, 2021
55
November, 2019
October, 2018
26
February, 2021
24
May, 2022
19
February, 2023
17
October, 2019
14
March, 2020
10
November, 2020
8
January, 2021
6
April, 2018
6
July, 2019
6
September, 2017
5
November, 2018
4
August, 2021
4
March, 2019
4
October, 2017
2
May, 2019
1
August, 2022
1
February, 2020
Available data
444
bam
391
bigWig
309
tsv
178
fastq
106
bed narrowPeak
29
bed bed3+
29
bigBed narrowPeak
bed broadPeak
19
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
hdf5
Organism
526
Homo sapiens
Biosample type
434
tissue
primary cell
91
cell line
3
in vitro differentiated cells
Organ
716
liver
618
connective tissue
528
pancreas
463
adipose tissue
353
heart
250
kidney
229
brain
194
blood vessel
194
vasculature
158
bone element
135
artery
118
epithelium
86
limb
61
blood
61
bodily fluid
53
eye
41
nerve
37
embryo
37
musculature of body
24
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
494
AMP
34
T1D
Genome assembly (visualization)
415
hg19
389
GRCh38
Lab
461
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
76
inconsistent ontology term
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed broadPeak
biosample_type!
primary cell
month_released!
October, 2018
BIOSAMPLE
ASSAY
528 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
MeRIP-seq
Hi-C
single cell RNA-seq
WGBS
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
pCHi-C
tissue
islet of Langerhans
278
44
56
7
4
3
6
1
1
1
pancreas
2
8
4
1
2
1
1
1
body of pancreas
3
2
4
2
2
cell line
EndoC_BH1
33
15
19
6
1
2
1
Panc1
13
1
in vitro differentiated cells
pancreatic PP cell
3
Download