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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
total RNA-seq
4
ChIP-seq
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
5
Transcription
4
DNA binding
1
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
1
control
Date released
5
December, 2019
4
August, 2021
2
July, 2019
1
October, 2019
Available data
12
bam
11
bigWig
6
bed bed3+
6
bed narrowPeak
5
tsv
4
tagAlign
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
12
Homo sapiens
Biosample type
358
tissue
343
cell line
15
in vitro differentiated cells
12
primary cell
Organ
384
epithelium
346
pancreas
33
connective tissue
26
kidney
25
vasculature
23
blood vessel
18
vein
13
musculature of body
12
liver
10
brain
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
12
AMP
Genome assembly (visualization)
11
hg19
9
GRCh38
Lab
12
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
12 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
RRBS
primary cell
hepatocyte
5
4
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
See all biosamples
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