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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
total RNA-seq
78
ChIP-seq
42
ATAC-seq
4
Hi-C
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
Assay category
78
DNA binding
Target of assay
47
histone
47
histone modification
25
broad histone mark
22
narrow histone mark
16
transcription factor
15
control
5
RNA binding protein
Date released
43
May, 2021
21
August, 2021
14
August, 2017
Available data
146
bam
fastq
115
bigWig
110
bed narrowPeak
40
tagAlign
19
bed bed3+
14
bigBed narrowPeak
Organism
78
Homo sapiens
Biosample type
661
tissue
183
primary cell
78
in vitro differentiated cells
64
cell line
Organ
14
connective tissue
3
epithelium
3
pancreas
Project
78
AMP
Genome assembly (visualization)
18
GRCh38
17
hg19
Lab
41
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
files.file_type!
bed broadPeak
fastq
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
in vitro differentiated cells
embryonic stem cell
37
neural progenitor cell
21
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
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