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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
total RNA-seq
708
ChIP-seq
63
ATAC-seq
17
WGBS
16
small RNA-seq
4
FAIRE-seq
1
DNase-seq
Assay category
923
Transcription
708
DNA binding
68
DNA accessibility
17
DNA methylation
Target of assay
452
histone modification
451
histone
237
narrow histone mark
214
broad histone mark
167
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
182
October, 2019
164
August, 2017
116
July, 2018
115
May, 2019
79
April, 2019
74
October, 2018
64
July, 2019
64
November, 2017
48
December, 2017
39
November, 2019
38
May, 2021
24
May, 2022
17
November, 2018
12
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1715
Homo sapiens
Biosample type
1716
tissue
560
primary cell
523
cell line
290
in vitro differentiated cells
3
stem cell
Organ
496
connective tissue
438
adipose tissue
416
pancreas
285
liver
191
brain
105
heart
82
blood vessel
82
vasculature
78
limb
66
bone element
40
nerve
30
artery
30
kidney
23
spleen
12
musculature of body
8
skeleton
1
pituitary gland
Project
1714
AMP
2
T1D
Genome assembly (visualization)
1513
GRCh38
1474
hg19
Lab
1692
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
1716 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
DNase-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
272
30
37
1
1
liver
147
122
1
bone tissue
58
body of pancreas
2
35
4
2
2
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