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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
5
Hi-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
34
DNA binding
5
3D chromatin structure
2
Transcription
1
DNA accessibility
Target of assay
17
histone
17
histone modification
13
transcription factor
9
narrow histone mark
8
broad histone mark
4
control
2
RNA binding protein
Date released
26
August, 2017
4
July, 2019
3
August, 2021
3
December, 2017
2
February, 2021
2
May, 2021
2
September, 2017
1
May, 2022
1
October, 2019
Available data
3101
bam
2870
bigWig
1645
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
44
Homo sapiens
Biosample type
29
tissue
in vitro differentiated cells
10
primary cell
3
stem cell
2
cell line
Organ
22
pancreas
8
liver
6
connective tissue
5
epithelium
4
adipose tissue
3
brain
2
blood vessel
2
vasculature
1
musculature of body
Project
44
AMP
Genome assembly (visualization)
44
hg19
35
GRCh38
Lab
42
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed broadPeak
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
Hi-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
islet of Langerhans
21
white adipose tissue
4
liver
3
skeletal muscle tissue
1
primary cell
hepatocyte
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 2 more…
stem cell
hESC
3
cell line
HepG2
1
Panc1
1
See all biosamples
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