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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
540
ChIP-seq
42
ATAC-seq
16
WGBS
16
small RNA-seq
4
FAIRE-seq
1
DNase-seq
Assay category
917
Transcription
540
DNA binding
47
DNA accessibility
16
DNA methylation
Target of assay
452
histone modification
451
histone
238
narrow histone mark
213
broad histone mark
88
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
170
May, 2020
156
October, 2019
152
August, 2017
116
July, 2018
93
May, 2019
65
April, 2019
63
July, 2019
51
November, 2017
45
October, 2018
38
May, 2021
36
December, 2017
20
May, 2022
19
November, 2019
14
November, 2018
11
March, 2020
10
October, 2017
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1520
Homo sapiens
Biosample type
1520
tissue
564
primary cell
463
cell line
258
in vitro differentiated cells
3
stem cell
Organ
478
connective tissue
420
adipose tissue
354
pancreas
262
liver
166
brain
90
heart
65
blood vessel
65
vasculature
58
bone element
55
limb
29
nerve
23
artery
23
kidney
15
spleen
12
musculature of body
1
pituitary gland
Project
1518
AMP
2
T1D
Genome assembly (visualization)
1481
GRCh38
1451
hg19
Lab
1500
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
1520 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
DNase-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
266
23
2
1
1
liver
147
82
20
1
bone tissue
58
body of pancreas
2
26
4
2
2
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