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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
single cell RNA-seq
2
RNA microarray
2
snATAC-seq
1
Hi-C
Assay category
7
Transcription
2
DNA accessibility
1
3D chromatin structure
Date released
5
February, 2021
4
December, 2019
1
August, 2022
1
May, 2022
1
October, 2019
Available data
9
tsv
6
txt
5
csv
1
bed bed3+
1
hic
Organism
12
Homo sapiens
Biosample type
9
tissue
2
in vitro differentiated cells
1
primary cell
Organ
7
kidney
2
epithelium
1
blood vessel
1
musculature of body
1
pancreas
1
vasculature
1
vein
Project
12
AMP
Genome assembly (visualization)
2
hg19
Lab
Klaus Kaestner, Upenn
12
AMP-T2D consortium
Audit category:
349
inconsistent ontology term
28
inconsistent control
12
audit script error
1
inconsistent replicate
files.file_type!
bed broadPeak
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
12 results
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single cell RNA-seq
RNA microarray
snATAC-seq
Hi-C
tissue
kidney
5
islet of Langerhans
1
kidney interstitium
1
renal glomerulus
1
skeletal muscle tissue
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
primary cell
endothelial cell of umbilical vein
1
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