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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ChIP-seq
98
total RNA-seq
29
ATAC-seq
17
pCHi-C
1
DNAme array
Assay category
122
DNA binding
98
Transcription
29
DNA accessibility
1
DNA methylation
Target of assay
119
histone
119
histone modification
66
broad histone mark
53
narrow histone mark
3
control
Date released
644
February, 2021
341
May, 2020
336
November, 2017
303
August, 2017
297
October, 2019
277
August, 2021
267
May, 2021
168
July, 2018
120
May, 2019
113
February, 2023
108
July, 2019
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
66
May, 2022
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
8
December, 2019
5
March, 2023
4
January, 2018
4
March, 2019
3
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
214
bigWig
192
bam
128
bed narrowPeak
94
tsv
84
tagAlign
2
bed bed3+
Organism
267
Homo sapiens
Biosample type
206
primary cell
in vitro differentiated cells
40
tissue
21
cell line
Organ
58
pancreas
21
epithelium
2
heart
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
153
T1D
114
AMP
Genome assembly (visualization)
227
hg19
192
GRCh38
Lab
188
Kyle Gaulton, UCSD
79
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
files.file_type!
bed broadPeak
lab.title!
Klaus Kaestner, Upenn
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
267 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
DNAme array
primary cell
monocyte
85
52
13
1
1
CD8-positive, alpha-beta T cell
33
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
+ See 11 more…
tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
cell line
EndoC_BH1
1
4
16
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