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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
Assay category
120
DNA binding
Target of assay
952
histone modification
951
histone
485
narrow histone mark
465
broad histone mark
465
transcription factor
343
control
105
RNA binding protein
89
recombinant protein
31
chromatin remodeller
5
nucleotide modification
4
other context
4
other post-translational modification
Date released
77
November, 2017
23
November, 2018
7
October, 2019
6
January, 2019
3
December, 2017
2
August, 2017
2
December, 2018
Available data
125
bam
124
bed narrowPeak
124
bigWig
118
fastq
115
bigBed narrowPeak
bed broadPeak
5
bigBed broadPeak
Organism
120
Homo sapiens
Biosample type
115
cell line
3
in vitro differentiated cells
2
tissue
Organ
101
liver
10
blood
10
bodily fluid
7
kidney
2
connective tissue
1
epithelium
Project
120
AMP
Genome assembly (visualization)
117
GRCh38
116
hg19
Lab
120
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
3
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed broadPeak
month_released!
December, 2019
BIOSAMPLE
ASSAY
120 results
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ChIP-seq
cell line
HepG2
98
GM12878
10
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
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