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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
554
ChIP-seq
189
total RNA-seq
23
ATAC-seq
8
snATAC-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
554
DNA binding
193
Transcription
32
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
345
transcription factor
114
control
90
histone modification
89
histone
82
recombinant protein
64
RNA binding protein
55
narrow histone mark
34
broad histone mark
29
chromatin remodeller
1
other context
1
other post-translational modification
Date released
257
November, 2017
194
May, 2020
65
November, 2018
63
December, 2017
54
August, 2017
40
May, 2022
35
August, 2021
28
December, 2018
23
January, 2019
10
July, 2019
8
January, 2021
7
October, 2019
5
December, 2019
3
February, 2021
3
March, 2020
1
February, 2020
January, 2018
Available data
741
bam
676
bigWig
525
fastq
495
bed narrowPeak
412
bigBed narrowPeak
174
tsv
86
tagAlign
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
796
Homo sapiens
Biosample type
403
cell line
358
tissue
20
primary cell
15
in vitro differentiated cells
Organ
925
pancreas
728
liver
673
connective tissue
502
epithelium
487
adipose tissue
363
heart
276
kidney
239
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
68
blood
68
bodily fluid
57
eye
49
musculature of body
41
nerve
36
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
788
AMP
8
T1D
Genome assembly (visualization)
616
hg19
536
GRCh38
Lab
717
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
8
Kyle Gaulton, UCSD
Audit category:
28
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed broadPeak
month_released!
January, 2018
BIOSAMPLE
ASSAY
796 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
320
14
1
1
2
2
2
1
GM12878
60
tissue
liver
145
167
20
3
1
1
1
1
1
right lobe of liver
10
3
1
1
2
1
primary cell
hepatocyte
4
5
1
peripheral blood mononuclear cell
8
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
15
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