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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
4
ATAC-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
124
DNA binding
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
111
histone
111
histone modification
85
narrow histone mark
26
broad histone mark
13
control
Date released
85
October, 2019
November, 2017
28
May, 2019
13
October, 2017
7
July, 2019
2
March, 2020
1
February, 2023
Available data
153
bam
144
bigWig
139
bed narrowPeak
64
bigBed narrowPeak
52
tagAlign
35
bed bed3+
bed broadPeak
32
bigBed broadPeak
12
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
136
Homo sapiens
Biosample type
132
tissue
4
primary cell
Organ
446
pancreas
299
epithelium
278
liver
197
heart
193
connective tissue
151
kidney
150
vasculature
149
blood vessel
136
brain
97
bone element
87
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
41
musculature of body
38
eye
36
nerve
24
spleen
23
embryo
18
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
136
AMP
Genome assembly (visualization)
112
hg19
107
GRCh38
Lab
136
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
2
missing controlled_by
files.file_type!
bed broadPeak
month_released!
November, 2017
assay_slims!
Transcription
BIOSAMPLE
ASSAY
136 results
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ChIP-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
17
1
1
angular gyrus
15
temporal lobe
15
superior frontal gyrus
4
central medial thalamic nucleus
3
+ See 65 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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