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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
Assay category
50
DNA binding
Target of assay
51
histone
51
histone modification
narrow histone mark
26
transcription factor
24
broad histone mark
2
chromatin remodeller
1
RNA binding protein
1
recombinant protein
Date released
28
August, 2017
17
September, 2018
November, 2017
3
November, 2018
2
October, 2017
Available data
51
fastq
50
bam
49
bigWig
21
bed narrowPeak
11
bed bed3+
4
bigBed narrowPeak
3
tagAlign
bed broadPeak
Organism
50
Homo sapiens
Biosample type
21
primary cell
21
tissue
5
in vitro differentiated cells
3
cell line
Organ
28
pancreas
17
connective tissue
12
adipose tissue
10
epithelium
3
liver
2
brain
Project
50
AMP
Genome assembly (visualization)
48
GRCh38
48
hg19
Lab
50
AMP-T2D consortium
Audit category:
50
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
files.file_type!
bed broadPeak
month_released!
November, 2017
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
50 results
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Clear Filters
ChIP-seq
primary cell
pancreatic endocrine cell
11
pancreatic ductal cell
6
pancreatic acinar cell
4
tissue
white adipose tissue
12
islet of Langerhans
7
brain
2
in vitro differentiated cells
adipocyte
5
cell line
HepG2
3
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