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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
370
ChIP-seq
43
single cell RNA-seq
6
total RNA-seq
1
Hi-C
Assay category
370
DNA binding
49
Transcription
1
3D chromatin structure
Target of assay
225
transcription factor
75
control
66
recombinant protein
65
histone
65
histone modification
40
broad histone mark
32
RNA binding protein
25
narrow histone mark
13
chromatin remodeller
1
other context
1
other post-translational modification
Date released
715
February, 2021
399
May, 2021
370
August, 2017
341
May, 2020
336
November, 2017
319
August, 2021
305
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
475
bam
413
bigWig
403
fastq
343
bed narrowPeak
342
bigBed narrowPeak
78
tagAlign
bed broadPeak
64
bigBed broadPeak
49
tsv
3
tar
Organism
420
Homo sapiens
Biosample type
285
cell line
89
tissue
46
primary cell
Organ
258
liver
79
brain
39
pancreas
35
epithelium
27
blood
27
bodily fluid
7
spleen
2
connective tissue
2
vasculature
1
blood vessel
Project
420
AMP
Genome assembly (visualization)
304
GRCh38
290
hg19
Lab
420
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
8
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
420 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
cell line
HepG2
257
1
GM12878
27
tissue
layer of hippocampus
22
caudate nucleus
14
substantia nigra
14
cingulate gyrus
12
middle frontal area 46
12
+ See 3 more…
primary cell
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
mesenchymal cell
5
+ See 8 more…
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