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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
336
ChIP-seq
41
single cell RNA-seq
6
total RNA-seq
Assay category
336
DNA binding
47
Transcription
Target of assay
197
transcription factor
71
control
66
recombinant protein
65
histone
65
histone modification
40
broad histone mark
30
RNA binding protein
25
narrow histone mark
11
chromatin remodeller
1
other context
1
other post-translational modification
Date released
397
May, 2021
341
May, 2020
336
November, 2017
314
August, 2021
301
October, 2019
260
February, 2021
247
August, 2017
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
80
April, 2019
79
November, 2018
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
19
April, 2020
19
June, 2019
18
October, 2017
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
439
bam
381
bigWig
367
fastq
313
bed narrowPeak
312
bigBed narrowPeak
78
tagAlign
bed broadPeak
64
bigBed broadPeak
47
tsv
3
tar
Organism
383
Homo sapiens
Biosample type
257
cell line
82
tissue
44
primary cell
Organ
257
liver
79
brain
39
pancreas
35
epithelium
connective tissue
2
vasculature
1
blood vessel
Project
383
AMP
Genome assembly (visualization)
272
GRCh38
258
hg19
Lab
383
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
8
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed broadPeak
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
383 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
cell line
HepG2
257
tissue
layer of hippocampus
22
caudate nucleus
14
substantia nigra
14
cingulate gyrus
12
middle frontal area 46
12
+ See 2 more…
primary cell
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
mesenchymal cell
5
+ See 7 more…
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