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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
296
ChIP-seq
43
single cell RNA-seq
6
total RNA-seq
Assay category
296
DNA binding
49
Transcription
Target of assay
197
transcription factor
71
control
66
recombinant protein
65
histone
65
histone modification
broad histone mark
30
RNA binding protein
25
narrow histone mark
11
chromatin remodeller
1
other context
1
other post-translational modification
Date released
715
February, 2021
341
May, 2020
323
May, 2021
310
August, 2021
296
November, 2017
283
August, 2017
252
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
108
July, 2019
79
December, 2017
79
November, 2018
64
March, 2020
62
May, 2019
59
September, 2020
57
October, 2018
56
September, 2018
55
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
23
June, 2019
20
May, 2024
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
395
bam
360
fastq
338
bigWig
268
bed narrowPeak
267
bigBed narrowPeak
bed broadPeak
56
bigBed broadPeak
49
tsv
37
tagAlign
3
tar
Organism
345
Homo sapiens
Biosample type
257
cell line
46
primary cell
42
tissue
Organ
257
liver
39
brain
39
pancreas
35
epithelium
2
connective tissue
2
vasculature
1
blood vessel
Project
345
AMP
Genome assembly (visualization)
260
hg19
238
GRCh38
Lab
345
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
8
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed broadPeak
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
345 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
cell line
HepG2
257
primary cell
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
mesenchymal cell
5
+ See 8 more…
tissue
layer of hippocampus
10
caudate nucleus
6
cingulate gyrus
6
islet of Langerhans
6
middle frontal area 46
6
+ See 2 more…
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