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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
3
ATAC-seq
1
Hi-C
Assay category
31
DNA binding
3
DNA accessibility
1
3D chromatin structure
Target of assay
14
histone
14
histone modification
9
narrow histone mark
9
transcription factor
8
control
5
broad histone mark
Date released
712
February, 2021
399
May, 2021
316
August, 2017
298
October, 2019
284
August, 2021
205
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
98
July, 2019
80
April, 2019
79
November, 2017
76
October, 2018
73
September, 2018
61
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
34
December, 2018
31
December, 2017
31
June, 2019
29
November, 2018
25
January, 2019
24
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
32
bam
32
fastq
22
bed narrowPeak
22
bigWig
15
bed bed3+
bed broadPeak
1
bedpe
1
hic
Organism
35
Homo sapiens
Biosample type
28
in vitro differentiated cells
4
tissue
3
stem cell
Organ
liver
19
epithelium
13
embryo
4
pancreas
Project
35
AMP
Genome assembly (visualization)
30
hg19
29
GRCh38
Lab
31
AMP-T2D consortium
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
files.file_type!
bed broadPeak
organ_slims!
liver
BIOSAMPLE
ASSAY
35 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
in vitro differentiated cells
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
Hepatic endoderm
4
tissue
islet of Langerhans
3
1
stem cell
hESC
3
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