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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
589
ChIP-seq
258
ATAC-seq
171
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1218
Transcription
589
DNA binding
282
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
201
August, 2017
199
October, 2019
193
May, 2020
120
July, 2018
95
February, 2023
77
July, 2019
66
May, 2022
59
May, 2019
55
October, 2018
47
September, 2023
45
December, 2017
43
April, 2019
40
May, 2021
40
November, 2019
39
March, 2020
36
November, 2017
25
February, 2020
20
May, 2024
17
November, 2018
15
May, 2023
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
3
January, 2019
2
January, 2018
1
August, 2022
Available data
1685
bam
1519
bigWig
1075
tsv
731
bed narrowPeak
357
bigBed narrowPeak
332
fastq
199
bed bed3+
bed broadPeak
176
bigBed broadPeak
162
tagAlign
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2259
Homo sapiens
Biosample type
2261
tissue
925
primary cell
592
cell line
337
in vitro differentiated cells
9
stem cell
Organ
524
connective tissue
465
adipose tissue
452
pancreas
333
liver
229
heart
221
kidney
163
brain
158
bone element
92
blood vessel
92
vasculature
55
artery
53
eye
52
limb
29
musculature of body
25
nerve
lung
20
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2183
AMP
47
KPMP
31
T1D
Genome assembly (visualization)
1434
GRCh38
1381
hg19
Lab
1950
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
21
missing controlled_by
Audit category:
3
inconsistent control read length
files.file_type!
bed broadPeak
organ_slims!
lung
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
2261 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
55
66
6
4
7
3
1
1
4
1
adipose tissue
382
2
3
3
1
liver
167
123
20
1
3
1
1
1
1
kidney
49
17
75
64
6
1
1
1
bone element
84
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