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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
22
ChIP-seq
8
ATAC-seq
4
Hi-C
1
FAIRE-seq
Assay category
54
Transcription
22
DNA binding
9
DNA accessibility
4
3D chromatin structure
Target of assay
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
5
control
4
transcription factor
Date released
66
February, 2021
17
October, 2019
4
July, 2019
1
March, 2020
1
November, 2017
Available data
93
bam
80
bigWig
54
tsv
29
bed narrowPeak
17
bigBed narrowPeak
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
6
tagAlign
3
fastq
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
89
Homo sapiens
Biosample type
tissue
66
cell line
23
primary cell
Organ
487
epithelium
440
pancreas
370
liver
130
connective tissue
91
vasculature
89
blood vessel
77
heart
69
blood
69
bodily fluid
68
artery
45
kidney
37
embryo
18
vein
13
musculature of body
10
brain
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
89
AMP
Genome assembly (visualization)
82
hg19
76
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed broadPeak
biosample_type!
tissue
BIOSAMPLE
ASSAY
89 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
15
2
1
brain microvascular endothelial cell
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
smooth muscle cell of the coronary artery
1
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