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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
total RNA-seq
84
RNA microarray
57
ATAC-seq
28
ChIP-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
120
Transcription
57
DNA accessibility
28
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
210
February, 2021
43
February, 2023
24
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
1
May, 2021
Available data
168
bam
143
bigWig
116
tsv
88
txt
82
bed narrowPeak
25
bigBed narrowPeak
tagAlign
4
bed bed3
4
bed bed3+
bed broadPeak
4
bigBed broadPeak
Organism
290
Homo sapiens
Biosample type
227
tissue
60
cell line
3
primary cell
Organ
918
pancreas
653
connective tissue
653
liver
495
epithelium
481
adipose tissue
357
heart
276
kidney
213
vasculature
211
blood vessel
159
bone element
131
artery
130
brain
86
limb
69
blood
69
bodily fluid
57
eye
48
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
289
AMP
1
T1D
Genome assembly (visualization)
186
GRCh38
155
hg19
Lab
289
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
files.file_type!
bed broadPeak
tagAlign
BIOSAMPLE
ASSAY
290 results
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total RNA-seq
RNA microarray
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
bone element
84
bone tissue
58
coronary artery
1
36
5
tibial artery
1
1
23
acetabular part of hip bone
1
1
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
endothelial cell of coronary artery
1
megakaryocyte
1
smooth muscle cell of the coronary artery
1
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