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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
203
DNA binding
7
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
175
histone
175
histone modification
109
narrow histone mark
66
broad histone mark
31
control
Date released
85
October, 2019
79
November, 2017
28
May, 2019
14
July, 2019
13
October, 2017
2
March, 2020
1
February, 2023
Available data
238
bam
217
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
9
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
222
Homo sapiens
Biosample type
212
tissue
10
primary cell
Organ
539
liver
522
pancreas
371
epithelium
251
heart
222
brain
216
kidney
200
connective tissue
158
vasculature
156
blood vessel
97
bone element
90
adipose tissue
81
artery
79
limb
69
blood
69
bodily fluid
44
musculature of body
38
eye
36
nerve
24
spleen
23
embryo
20
lung
18
vein
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
222
AMP
Genome assembly (visualization)
166
GRCh38
122
hg19
Lab
222
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
2
missing controlled_by
files.file_type!
bed broadPeak
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
222 results
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ChIP-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
17
1
1
temporal lobe
15
1
angular gyrus
15
substantia nigra
15
+ See 69 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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