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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
122
DNA binding
24
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
94
histone
94
histone modification
83
narrow histone mark
31
control
11
broad histone mark
Date released
86
October, 2019
27
November, 2017
17
July, 2019
12
February, 2020
9
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
240
bam
219
bigWig
200
bed narrowPeak
bigBed narrowPeak
114
tagAlign
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
17
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
157
Homo sapiens
Biosample type
147
tissue
10
primary cell
Organ
793
pancreas
638
connective tissue
468
adipose tissue
426
liver
425
epithelium
299
heart
250
kidney
159
bone element
157
brain
151
vasculature
149
blood vessel
116
artery
55
eye
38
limb
36
embryo
36
musculature of body
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
7
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
157
AMP
Genome assembly (visualization)
98
hg19
91
GRCh38
Lab
157
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
missing controlled_by
files.file_type!
bed broadPeak
bigBed narrowPeak
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
157 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
13
1
1
1
cingulate gyrus
7
layer of hippocampus
7
cerebellum (Hemisphere)
3
1
1
1
substantia nigra
5
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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