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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
182
DNA binding
12
Transcription
3
DNA accessibility
Target of assay
155
histone
155
histone modification
98
narrow histone mark
57
broad histone mark
30
control
Date released
83
October, 2019
67
November, 2017
28
May, 2019
13
July, 2019
6
October, 2017
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
197
Homo sapiens
Biosample type
191
tissue
6
primary cell
Organ
675
pancreas
618
liver
584
connective tissue
440
adipose tissue
295
epithelium
197
brain
181
heart
168
vasculature
167
blood vessel
98
artery
78
limb
66
bone element
66
kidney
60
blood
60
bodily fluid
40
nerve
36
embryo
24
musculature of body
23
spleen
16
vein
8
skeleton
3
eye
1
pericardium
1
pituitary gland
Project
197
AMP
Genome assembly (visualization)
169
GRCh38
119
hg19
Lab
197
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
197 results
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ChIP-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
layer of hippocampus
20
temporal lobe
15
1
1
angular gyrus
15
caudate nucleus
13
substantia nigra
13
+ See 65 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
See all biosamples
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