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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
13
total RNA-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
57
DNA binding
13
Transcription
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
39
control
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
Date released
27
November, 2017
19
October, 2019
13
February, 2020
9
October, 2017
6
July, 2019
3
May, 2019
2
March, 2020
1
February, 2023
Available data
39
bam
36
tagAlign
15
tsv
8
bigWig
6
fastq
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
1
bed bed3
bed broadPeak
1
bigBed narrowPeak
Organism
80
Homo sapiens
Biosample type
73
tissue
7
primary cell
Organ
304
pancreas
246
liver
228
epithelium
149
kidney
127
heart
117
connective tissue
93
bone element
68
brain
66
adipose tissue
55
eye
43
vasculature
41
blood vessel
30
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
8
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
GRCh38
156
hg19
Lab
80
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed broadPeak
assembly!
GRCh38
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
FAIRE-seq
tissue
tibial nerve
11
1
brain
9
1
1
cingulate gyrus
7
layer of hippocampus
6
substantia nigra
4
1
+ See 21 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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