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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
total RNA-seq
77
ChIP-seq
34
ATAC-seq
6
WGBS
6
pCHi-C
3
small RNA-seq
1
RNA microarray
1
RRBS
Assay category
420
Transcription
77
DNA binding
34
DNA accessibility
7
DNA methylation
Target of assay
34
histone
34
histone modification
25
control
20
broad histone mark
18
transcription factor
14
narrow histone mark
6
RNA binding protein
Date released
386
February, 2021
56
August, 2017
32
February, 2023
23
October, 2018
22
October, 2019
13
July, 2019
3
February, 2020
3
June, 2019
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
449
bam
431
bigWig
406
tsv
46
bed narrowPeak
44
fastq
16
bigBed narrowPeak
10
bed bed3+
8
tagAlign
bed broadPeak
6
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
544
Homo sapiens
Biosample type
538
tissue
6
primary cell
1
in vitro differentiated cells
Organ
925
pancreas
728
liver
674
connective tissue
502
epithelium
488
adipose tissue
323
heart
276
kidney
239
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
545
AMP
Genome assembly (visualization)
453
hg19
424
GRCh38
Lab
545
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
545 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
7
12
1
1
1
islet of Langerhans
14
2
1
4
omental fat pad
5
11
1
1
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primary cell
retinal pigment epithelial cell
3
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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