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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
49
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
control
15
narrow histone mark
Date released
49
October, 2019
6
February, 2021
6
May, 2019
5
July, 2019
3
February, 2020
Available data
97
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
69
Homo sapiens
Biosample type
69
tissue
Organ
872
pancreas
639
connective tissue
620
liver
472
epithelium
464
adipose tissue
343
heart
264
kidney
208
brain
197
vasculature
196
blood vessel
159
bone element
128
artery
69
limb
63
blood
63
bodily fluid
56
eye
44
musculature of body
30
embryo
30
nerve
20
lung
16
skeleton
16
spleen
16
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
69
AMP
Genome assembly (visualization)
60
GRCh38
60
hg19
Lab
69
AMP-T2D consortium
files.file_type!
bed broadPeak
target.investigated_as!
control
BIOSAMPLE
ASSAY
69 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
24
1
5
tibial artery
18
1
1
muscle of leg
6
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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