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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
476
ChIP-seq
180
total RNA-seq
22
ATAC-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
DNase-seq
1
single cell RNA-seq
Assay category
476
DNA binding
184
Transcription
23
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
283
transcription factor
104
control
86
histone modification
85
histone
82
recombinant protein
53
RNA binding protein
52
narrow histone mark
33
broad histone mark
19
chromatin remodeller
1
other context
1
other post-translational modification
Date released
257
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
50
November, 2018
40
May, 2022
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
681
bam
608
bigWig
465
fastq
427
bed narrowPeak
358
bigBed narrowPeak
165
tsv
86
tagAlign
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
696
Homo sapiens
Biosample type
358
tissue
311
cell line
15
in vitro differentiated cells
12
primary cell
Organ
921
pancreas
696
liver
668
connective tissue
502
epithelium
488
adipose tissue
363
heart
274
kidney
238
brain
219
vasculature
217
blood vessel
155
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
696
AMP
Genome assembly (visualization)
546
hg19
481
GRCh38
Lab
656
AMP-T2D consortium
40
Karen Mohlke, UNC
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed broadPeak
bed bed3
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
696 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
DNase-seq
single cell RNA-seq
tissue
liver
145
167
20
3
1
1
1
1
1
right lobe of liver
10
3
1
1
2
1
cell line
HepG2
302
5
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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