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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
5
ChIP-seq
5
pCHi-C
1
RRBS
Assay category
38
DNA accessibility
28
Transcription
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
21
October, 2019
19
April, 2020
3
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
Available data
33
bed narrowPeak
7
bam
6
bigBed narrowPeak
6
bigWig
6
tsv
4
bed bed3+
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
76
Homo sapiens
Biosample type
73
tissue
4
primary cell
Organ
925
pancreas
728
liver
674
connective tissue
502
epithelium
488
adipose tissue
323
heart
276
kidney
239
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
58
AMP
19
LungMap
Genome assembly (visualization)
30
hg19
2
GRCh38
Lab
58
AMP-T2D consortium
19
Xin Sun, UCSD
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
77 results
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ATAC-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
ChIP-seq
pCHi-C
RRBS
tissue
islet of Langerhans
1
14
2
4
lung
10
9
1
retina
15
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
3
1
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