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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
20
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
control
Date released
10
August, 2017
10
July, 2019
8
June, 2019
6
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
54
bam
47
bigBed narrowPeak
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
44
Homo sapiens
Biosample type
33
tissue
11
primary cell
Organ
872
pancreas
639
connective tissue
620
liver
472
epithelium
464
adipose tissue
303
heart
264
kidney
208
brain
197
vasculature
196
blood vessel
159
bone element
128
artery
69
limb
63
blood
63
bodily fluid
56
eye
44
musculature of body
30
embryo
30
nerve
20
lung
16
skeleton
16
spleen
16
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
44
AMP
Genome assembly (visualization)
27
hg19
20
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
1
audit script error
files.file_type!
bed broadPeak
target.investigated_as!
control
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
6
1
4
1
1
1
1
muscle of leg
6
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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