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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
2
WGBS
1
ATAC-seq
1
pCHi-C
Assay category
14
DNA binding
2
DNA methylation
1
DNA accessibility
Target of assay
8
control
6
histone
6
histone modification
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
7
January, 2019
5
November, 2018
4
December, 2018
1
March, 2020
1
October, 2017
Available data
18
bam
18
fastq
10
bigWig
8
bed narrowPeak
7
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
18
Homo sapiens
Biosample type
18
tissue
Organ
906
pancreas
connective tissue
495
epithelium
471
adipose tissue
434
liver
346
heart
266
kidney
239
brain
212
vasculature
210
blood vessel
159
bone element
132
artery
86
limb
56
eye
50
musculature of body
41
nerve
34
embryo
20
lung
18
blood
18
bodily fluid
18
spleen
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
18
AMP
Genome assembly (visualization)
9
GRCh38
7
hg19
Lab
18
AMP-T2D consortium
files.file_type!
bed broadPeak
organ_slims!
connective tissue
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
WGBS
ATAC-seq
pCHi-C
tissue
spleen
14
2
1
1
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