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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
46
ATAC-seq
5
Hi-C
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
95
DNA binding
Transcription
47
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
67
histone
67
histone modification
43
broad histone mark
24
narrow histone mark
21
control
7
transcription factor
3
RNA binding protein
Date released
50
May, 2019
41
October, 2019
35
February, 2023
14
February, 2021
6
July, 2019
3
March, 2020
1
November, 2017
Available data
129
bed narrowPeak
122
bam
92
bigWig
79
bigBed narrowPeak
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
1
tsv
Organism
150
Homo sapiens
Biosample type
115
tissue
21
primary cell
14
cell line
Organ
535
liver
444
pancreas
300
epithelium
215
brain
197
heart
192
connective tissue
152
vasculature
151
kidney
150
blood vessel
97
bone element
86
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
41
musculature of body
38
eye
36
nerve
24
spleen
23
embryo
18
vein
12
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
150
AMP
Genome assembly (visualization)
118
GRCh38
89
hg19
Lab
150
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed broadPeak
assay_slims!
Transcription
BIOSAMPLE
ASSAY
150 results
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ChIP-seq
ATAC-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery
5
36
tibial artery
23
1
aorta
13
1
2
1
thoracic aorta
16
1
ascending aorta
16
primary cell
endothelial cell of umbilical vein
15
2
1
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
6
8
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