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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
88
ChIP-seq
3
Hi-C
Assay category
98
Transcription
88
DNA binding
3
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
136
May, 2021
45
May, 2020
5
March, 2020
3
October, 2022
Available data
186
bam
186
bigWig
98
tsv
88
bed narrowPeak
84
tagAlign
3
bedpe bed3+
3
cool
3
hic
Organism
189
Homo sapiens
Biosample type
183
primary cell
4
cell line
2
tissue
Organ
9
pancreas
7
epithelium
Project
AMP
186
T1D
3
HPAP
Genome assembly (visualization)
197
GRCh38
189
hg19
Lab
180
Kyle Gaulton, UCSD
6
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
8
inconsistent ontology term
3
audit script error
files.file_type!
bed broadPeak
award.project!
AMP
BIOSAMPLE
ASSAY
189 results
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total RNA-seq
ChIP-seq
Hi-C
primary cell
monocyte
53
84
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 23 more…
cell line
EndoC_BH1
2
2
tissue
islet of Langerhans
2
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