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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1028
total RNA-seq
869
ChIP-seq
256
ATAC-seq
174
single cell RNA-seq
86
RNA microarray
27
WGBS
27
snATAC-seq
16
small RNA-seq
11
RRBS
9
Hi-C
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1218
Transcription
869
DNA binding
289
DNA accessibility
38
DNA methylation
9
3D chromatin structure
Target of assay
591
histone modification
590
histone
307
narrow histone mark
283
broad histone mark
186
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
257
August, 2017
238
October, 2019
228
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
80
April, 2019
77
July, 2019
76
November, 2017
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
19
October, 2017
18
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1891
bam
1755
bigWig
1048
tsv
976
bed narrowPeak
555
bigBed narrowPeak
370
fastq
231
tagAlign
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
4
hic
3
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
2521
Homo sapiens
Biosample type
2521
tissue
1038
primary cell
588
cell line
385
in vitro differentiated cells
4
stem cell
Organ
542
connective tissue
483
adipose tissue
475
pancreas
355
liver
279
heart
231
kidney
227
brain
158
bone element
125
blood vessel
125
vasculature
86
limb
69
artery
53
eye
41
nerve
32
musculature of body
23
spleen
18
lung
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
1
thymus
Project
2429
AMP
47
KPMP
27
T1D
18
LungMap
Genome assembly (visualization)
1659
GRCh38
1541
hg19
Lab
2172
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
18
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
24
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bed broadPeak
month_released!
March, 2020
BIOSAMPLE
ASSAY
2521 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
small RNA-seq
RRBS
Hi-C
pCHi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
296
63
64
7
1
3
4
1
4
1
adipose tissue
382
2
3
3
liver
166
145
20
1
3
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
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