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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
593
ChIP-seq
Assay category
593
DNA binding
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
186
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
168
October, 2019
98
August, 2017
89
May, 2019
64
November, 2017
60
April, 2019
35
May, 2024
30
October, 2018
27
May, 2020
9
October, 2017
6
January, 2019
5
December, 2017
2
March, 2020
Available data
516
bigWig
514
bed narrowPeak
460
bam
306
bigBed narrowPeak
180
tagAlign
68
fastq
bed broadPeak
12
bed bed3+
1
tagAlign bed3+
Organism
593
Homo sapiens
Biosample type
593
tissue
221
primary cell
112
in vitro differentiated cells
24
cell line
2
stem cell
Organ
175
brain
95
heart
70
liver
61
pancreas
54
blood vessel
54
vasculature
49
limb
32
connective tissue
31
adipose tissue
24
nerve
20
artery
20
kidney
12
musculature of body
6
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
591
AMP
2
T1D
Genome assembly (visualization)
480
GRCh38
403
hg19
Lab
558
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
593 results
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Clear Filters
ChIP-seq
tissue
liver
65
islet of Langerhans
45
left cardiac atrium
35
subcutaneous abdominal adipose tissue
30
heart left ventricle
24
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