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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
Assay category
91
DNA binding
10
DNA accessibility
9
Transcription
Target of assay
42
transcription factor
31
histone
31
histone modification
21
control
16
narrow histone mark
15
broad histone mark
4
RNA binding protein
chromatin remodeller
Date released
715
February, 2021
399
May, 2021
368
August, 2017
341
May, 2020
325
November, 2017
319
August, 2021
305
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
91
December, 2017
80
April, 2019
76
October, 2018
73
September, 2018
72
November, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
33
December, 2018
31
June, 2019
25
February, 2020
24
January, 2019
19
April, 2020
19
October, 2017
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
91
bam
91
fastq
69
bed narrowPeak
69
bigWig
47
bigBed narrowPeak
15
bed bed3+
Organism
109
Homo sapiens
Biosample type
65
tissue
42
in vitro differentiated cells
3
stem cell
Organ
60
liver
19
lung
18
epithelium
13
embryo
Project
91
AMP
19
LungMap
Genome assembly (visualization)
74
GRCh38
74
hg19
Lab
91
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
25
inconsistent control
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
files.file_type!
bed broadPeak
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
110 results
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Clear Filters
ChIP-seq
snATAC-seq
single cell RNA-seq
tissue
liver
36
lung
10
9
right lobe of liver
10
in vitro differentiated cells
hepatocyte
14
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
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stem cell
hESC
3
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