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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
pCHi-C
2
ChIP-seq
1
RRBS
Assay category
28
DNA accessibility
19
Transcription
2
DNA binding
1
DNA methylation
Target of assay
3
histone
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
19
October, 2019
2
June, 2019
1
February, 2020
1
July, 2019
Available data
32
bed narrowPeak
6
bam
5
bigBed narrowPeak
5
bigWig
5
tsv
4
bed bed3+
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
54
Homo sapiens
Biosample type
51
tissue
3
primary cell
Organ
712
pancreas
638
liver
593
connective tissue
457
adipose tissue
343
epithelium
182
kidney
173
heart
159
bone element
146
vasculature
144
blood vessel
115
artery
68
blood
68
bodily fluid
61
brain
54
eye
37
limb
29
musculature of body
25
embryo
18
spleen
17
nerve
16
skeleton
11
lung
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
54
AMP
Genome assembly (visualization)
29
hg19
1
GRCh38
Lab
54
AMP-T2D consortium
files.file_type!
bed broadPeak
target.investigated_as!
histone modification
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
54 results
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ATAC-seq
total RNA-seq
pCHi-C
ChIP-seq
RRBS
tissue
islet of Langerhans
1
14
4
retina
15
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
2
1
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